DiSSCo-ITINERIS dataset

IPSP Dataset of Bacterial Species Collection (IPSP-BAC)

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Version
1.1
Created
2024-08-12 (16:10:50)
Modified
2024-08-14 (09:47:18)
Publication
2024-08-14 (00:00:00)
Language
eng
Dataset Label
n/a
Dataset Type
Occurrence
Dataset subtype
n/a
Description
The CNR-IPSP-BAC includes about 100 bacterial strains isolated from different host plants from the Mediterranean area, including pathogenic or beneficial plant bacterial species belonging to Agrobacterium, Bacillus, Erwinia and Pseudomonas genera. Preservation techniques - Cryo: bacterial suspensions in water glycerol (30% v/v) stored at- 80 °C in cryovials; Fresh cultures: bacterial suspensions in ultrapure water stored at 4 °C in plastic tubes. Aims: Taxonomical Identification (morphological, biochemical and molecular), isolation, preservation and cultivation of microorganisms.
Purpose

Agriculture, Biocontrol agents, PGPR

Keywords
Occurrence, Agriculture; Biocontrol agents; PGPR, Specimen
Collection

Name: IPSP Collection of Bacterial Species
Identifier: 976e0760-4db6-4209-afa4-17c4098b78f3
Specimen Preservation Method: REFRIGERATED

Taxonomic Coverage
n/a
Geographic Coverage
Italy, Algeria, Pakistan, United States of America
Min Latitude: -90
Max Latitude: 90
Min Longitude: -180
Max Longitude: 180
Global Coverage: 1
Temporal Coverages
2013-current
Citation
Raio A, Schillaci M, Bucci G (2024). IPSP Dataset of Bacterial Species Collection (IPSP-BAC). Version 1.1. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/vs7fvr accessed via GBIF.org on 2025-05-03.
Identifiers
UUID: 2a5f75af-401e-4362-850e-b6efb6849dd1
URL: https://ipt.ibbr.cnr.it/ipt/resource?r=ipsp-fi-bac
Contributors

Aida Raio (Originator)
Curator and scientific responsible of the collection of bacterial species
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0001-9007-4342
aida.raio@ipsp.cnr.it

Martino Schillaci (Originator)
Post-doc
CNR-IPSP-BA, Institute for Sustainable Plant Protection (IPSP) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0002-1645-0909
martino.schillaci@ipsp.cnr.it

Gabriele Bucci (Metadata author)
Senior Researcher
CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
https://orcid.org/0000-0001-8931-0344
gabriele.bucci@cnr.it

Dept. of Bio-Agrifood Sciences (Content provider)
Research Department
National Research Council of Italy (CNR)

Aida Raio (Administrative point of contact)
Reference Person
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence)
https://orcid.org/0000-0001-9007-4342
aida.raio@ipsp.cnr.it

Project

ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173).

Project people:

Giovanni Giuseppe Vendramin (Principal investigator)
https://orcid.org/0000-0001-9921-7872

Mauro Centritto (Distributor)
https://orcid.org/0000-0002-3739-1397

Sampling
Method Steps:
Additional Info
Data and samples collected and analyzed within the following research projects: Partner of MIRRI Italian Node (www.mirri-it.it);
Acknowledgements
n/a
IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
  National Research Council of Italy. All Rights Reserved.

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