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    CNR-IPSP Tree Fungal Pathogens Dataset (collection CNR-IPSP-FPOFUAOPWS)

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    doi
    https://doi.org/10.15468/2wsrke
    Version
    1.1
    Created
    2024-11-19 (12:53:15)
    Modified
    2025-02-18 (17:58:06)
    Publication
    2025-02-18 (00:00:00)
    Language
    eng
    Home Page
    https://biomemory.cnr.it/collections/CNR-IPSP-FPOFUAOPWS
    Dataset Label
    CNR-IPSP-FPOFUAOPWS-01
    Dataset Type
    Occurrence
    Dataset subtype
    Specimen
    Description
    The dataset includes Ascomycetous fungi isolated from forest and urban trees (Ophiostoma ulmi, O.novo-ulmi , Ceratocystis platani, Diplodia sapinea, Botryosphaericeae) and oomycetes isolated in ornamental nursery (Pythium, Phytophthora, Mortariella). The CNR-IPSP-FPOFUAOPWS collection preserves about 1500 strains for research purposes, also includes strains from collections of other Research centers or Universities. The strains are mainly isolated from plant tissues in different geographical areas. Preservation techniques: (i) CRYO: Freezer at -20 °C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/v) or in pure water; (ii) FRESH CULTURES: Refrigerator at 4 °C in agar slants with mycelium. The ultimate goals of the collection are: taxonomical Identification (morphological, molecular), molecular typing; isolation, preservation and cultivation of microorganisms; population genetic studies; genetic and phenotypic variability; host-pathogen interaction; inoculation for disease resistance; biocontrol; ecological and physiology studies, biochemical characterization. The collection is a partner of the MIRRI Italian Node (https://www.mirri-it.it).
    Purpose

    Taxonomical Identification through morphological and molecular characterization of specimens; molecular typing; isolation, preservation, and cultivation of microorganisms; population genetic studies; genetic and phenotypic variability; host-pathogen interaction; inoculation for disease resistance; biocontrol; ecological and physiology studies, biochemical characterization; plant pathology, agriculture, forestry

    Keywords
    Occurrence, Tree species, Plant pathology, Ophiostoma sp., Ophiostoma ulmi, Forestry, Ophiostoma himal-ulmi, Ophiostoma quercus, Specimen
    License
    http://creativecommons.org/licenses/by-nc/4.0/legalcode
    Collection

    Name: CNR-IPSP-FPOFUAOPWS - Fungal Pathogens of Forest, Urban and Ornamental Plant Woody Species
    Identifier: 3266e65b-77cb-4d96-9ba8-5f392445f867
    Specimen Preservation Method: GLYCERIN

    Taxonomic Coverage
    Ascomycetous fungi isolated from forest and urban trees (Ophiostoma ulmi, O.novo-ulmi, Ceratocystis platani, Diplodia sapinea, Botryosphaericeae) and oomycetes isolated in ornamental nursery (Pythium, Phytophthora, Mortariella).
    Kingdom: Fungi
    Class: Sordariomycetes
    Phylum: Ascomycota
    Order: Ophiostomatales
    Family: Ophiostomataceae
    Geographic Coverage
    Italy
    Min Latitude: 38.154011
    Max Latitude: 44.2275
    Min Longitude: 10.004722
    Max Longitude: 14.617222
    Global Coverage: n/a
    Temporal Coverages
    1999-present
    Citation
    Luchi N, Santini A, Migliorini D, Pepori A L, Pecori F, Bucci G, Bio-Agrifood Sciences D O (2025). CNR-IPSP Tree Fungal Pathogens Dataset (collection CNR-IPSP-FPOFUAOPWS). Version 1.1. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/2wsrke accessed via GBIF.org on 2025-05-03.
    Endpoints
    DWC ARCHIVE: https://ipt.ibbr.cnr.it/ipt/archive.do?r=cnr-ipsp-tree-fungal-pathogens
    EML: https://ipt.ibbr.cnr.it/ipt/eml.do?r=cnr-ipsp-tree-fungal-pathogens
    Identifiers
    UUID: 36075f43-5d48-4346-a82c-99bce4f02389
    URL: https://ipt.ibbr.cnr.it/ipt/resource?r=cnr-ipsp-tree-fungal-pathogens
    UUID: a514f970-a594-25d8-446d-37c51b949cb8
    Contributors

    Nicola Luchi (Originator)
    Curator and scientific responsible for the molecular characterization of the collection
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
    https://orcid.org/0000-0003-3119-7574
    nicola.luchi@cnr.it

    Alberto Santini (Originator)
    Curator and scientific responsible of the collection
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
    https://orcid.org/0000-0002-7955-9207
    alberto.santini@cnr.it

    Duccio Migliorini (Originator)
    Molecular characterization and responsible of database collection
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
    duccio.migliorini@ipsp.cnr.it

    Alessia Lucia Pepori (Originator)
    Responsible for molecular characterization and strain preservation
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
    https://orcid.org/0000-0002-9184-7965
    alessia.pepori@ipsp.cnr.it

    Francesco Pecori (Originator)
    Responsible for molecular characterization and micropropagation
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
    https://orcid.org/0000-0002-6577-7190
    francesco.pecori@ipsp.cnr.it

    Gabriele Bucci (Metadata author)
    Senior Researcher
    CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
    https://orcid.org/0000-0001-8931-0344
    gabriele.bucci@cnr.it

    Dept. of Bio-Agrifood Sciences (Metadata author)
    Research Department
    National Research Council of Italy (CNR)

    Institute of Sustainable Plant Protection CNR-IPSP (Content provider)
    National Research Council of Italy (CNR)

    Nicola Luchi (Administrative point of contact)
    Reference Person
    CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence)
    https://orcid.org/0000-0003-3119-7574
    nicola.luchi@cnr.it

    Project

    ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

    Identifier: PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173

    Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) and related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

    Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173

    Funder details:
    Funder Name: Consiglio Nazionale delle Ricerche
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: CNR-DiSBA no. SAC.AD002.173
    Title: Bio Memory Project (CNR-DiSBA)
    Award Url: https://www.disba.cnr.it/en/
    Funder Name: Ministero dell'Università e della Ricerca
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: PNRR Project IR0000032
    Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
    Award Url: https://itineris.cnr.it/
    Project people:

    Nicola Luchi (Author)
    https://orcid.org/0000-0003-3119-7574

    Alberto Santini (Author)
    https://orcid.org/0000-0002-7955-9207

    Alessia Lucia Pepori (Author)
    https://orcid.org/0000-0002-9184-7965

    Gabriele Bucci (Custodian steward)
    https://orcid.org/0000-0001-8931-0344

    Eleonora Fornaro (Programmer)
    https://orcid.org/0009-0008-0886-5339

    Marina Tumolo (Reviewer)
    https://orcid.org/0000-0001-8182-0454

    Massimo Ianigro (Programmer)
    https://orcid.org/0000-0003-1256-771X

    Sampling
    n/a
    Additional Info
    The collection participates in the MIRRI Italian Node (https://www.mirri-it.it) and has been involved in the CNR project "BioGenRes" (http://www.biogenres.cnr.it/).
    Acknowledgements
    PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being.
    IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
      National Research Council of Italy. All Rights Reserved.
      Credits

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