DiSSCo-ITINERIS dataset

Quercus cerris populations from Central-Eastern Europe and Middle East (IBBR-QUERCUS-CERRIS)

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Version
1.2
Created
2024-07-16 (13:46:53)
Modified
2025-02-18 (13:20:52)
Publication
2025-02-18 (00:00:00)
Language
eng
Dataset Label
IBBR-QUERCUS-CERRIS
Dataset Type
Occurrence
Dataset subtype
Specimen
Description
A total of 192 populations of Quercus cerris from the eastern Mediterranean Basin (Italy, Balkan peninsula, Anatolia) were genotyped with six polymorphic chloroplast microsatellites, and the genetic diversity and differentiation of the populations were evaluated. DNA samples are kept in collection at -20° C and available for research use only.
Purpose

The dataset includes more than 1,100 records of cryopreserved DNA and tissue samples of several forest tree species collected during past and current national and EU projects. The aim is to investigate the genetic makeup of their populations and assess their infraspecific biodiversity across Europe, from the biogeographical to the local level.

Keywords
Occurrence, Specimen, Turkey oaks, Forest tree populations, Intraspecific biodiversity, Range-wide genetic variability, Quercus cerris L.
Collection

Name: DNA and samples for genetic analyses on forest trees (CNR-IBBR-DNAFOR)
Identifier: 90a41989-9906-41d4-aff9-0dc8420c7a45
Specimen Preservation Method: REFRIGERATED

Taxonomic Coverage
Quercus cerris L., Turkey oak
Class: Magnoliopsida
Order: Fagales
Kingdom: Plantae
Family: Fagaceae
Phylum: Tracheophyta
Geographic Coverage
Central Europe, Eastern Europe, Balkan peninsula, Middle East (Italy, Hungary, Slovakia, Serbia, Turkey, Bulgaria, Macedonia, Albania, Croatia, Romania, Bosnia, Slovenia, Greece, Austria, Lebanon, Ukraine, Montenegro)
Min Latitude: 33.783333
Max Latitude: 49.366667
Min Longitude: 8.636012
Max Longitude: 37.4
Global Coverage: n/a
Temporal Coverages
2014-2016
Citation
Bagnoli F, Spanu I, Avanzi C, Vendramin G G, Piotti A, Bucci G, Ianigro M (2025). Quercus cerris populations from Central-Eastern Europe and Middle East (IBBR-QUERCUS-CERRIS). Version 1.2. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/qwefvq accessed via GBIF.org on 2025-05-03.
Identifiers
UUID: 3a80944e-06ce-4226-ac9f-052ff0dcbd97
URL: https://ipt.ibbr.cnr.it/ipt/resource?r=ibbr-quercus-cerris
Contributors

Francesca Bagnoli (Originator)
Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/0000-0001-6909-0006
francesca.bagnoli@ibbr.cnr.it

Ilaria Spanu (Originator)
Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/0000-0002-5682-133X
ilaria.spanu@ibbr.cnr.it

Camilla Avanzi (Originator)
Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/0000-0003-1632-5304
camilla.avanzi@ibbr.cnr.it

Giovanni Giuseppe Vendramin (Originator)
Research Director
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/0000-0001-9921-7872
giovanni.vendramin@ibbr.cnr.it

Andrea Piotti (Originator)
Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/0000-0002-3324-5325
andrea.piotti@ibbr.cnr.it

Gabriele Bucci (Metadata author)
Senior Researcher
CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
https://orcid.org/0000-0001-8931-0344
gabriele.bucci@cnr.it

Massimo Ianigro (Metadata author)
Senior Technologist
CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
https://orcid.org/gabriele.bucci@cnr.it
massimo.ianigro@irsa.ba.cnr.it

Institute of Biosciences and Bio Resources CNR-IBBR (Content provider)
Research Institute
National Research Council of Italy (CNR)

Department of Bio-Agri-Food Sciences CNR-DiSBA (Publisher)
National Research Council of Italy

Francesca Bagnoli (Administrative point of contact)
Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
https://orcid.org/gabriele.bucci@cnr.it
francesca.bagnoli@ibbr.cnr.it

Project

ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

Content: ITINERIS - Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || Bio Memory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.

Funding: PNRR project IR0000032 - ITINERIS, Italian Integrated Environmental Research Infrastructures System - CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU - Next Generation EU - Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || Bio Memory (CNR-DiSBA Project No. SAC.AD002.173)

Funder details:
Funder Name: Ministero dell'Università e della Ricerca
Funder Identifiers: https://doi.org/10.13039/501100021856
Award Number: PNRR Project IR0000032
Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
Award Url: https://itineris.cnr.it
Funder Name: Consiglio Nazionale delle Ricerche
Funder Identifiers: https://doi.org/10.13039/501100004462
Award Number: CNR-DiSBA no. SAC.AD002.173
Title: Bio Memory Project (CNR-DiSBA)
Award Url: https://www.disba.cnr.it/en/
Project people:

Eleonora Fornaro (Programmer)
https://orcid.org/0009-0008-0886-5339

Gabriele Bucci (Custodian steward)
https://orcid.org/0000-0001-8931-0344

Marina Tumolo (Metadata author)
https://orcid.org/0000-0001-8182-0454

Massimo Ianigro (Programmer)
https://orcid.org/0000-0003-1256-771X

Giovanni Giuseppe Vendramin (Principal investigator)
https://orcid.org/0000-0001-9921-7872

Sampling
Study Extent: Central and Eastern European populations of Quercus cerris L. have been considered, along with several populations from Turkey,
Sampling: Trees were randomly sampled from selected natural stands, with each population consisting of 42 to 50 individuals.
Method Steps: None
Additional Info
Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change
Acknowledgements
n/a
IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
  National Research Council of Italy. All Rights Reserved.

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