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  • Dataset 10.15468/trnr4h

    • DiSSCo-ITINERIS dataset

    Plant Virus Italy - CNR-IPSP collection in Turin (PLAVIT-01)

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    doi
    https://doi.org/10.15468/trnr4h
    Version
    1.1
    Created
    2024-08-23 (14:10:33)
    Modified
    2024-11-18 (12:30:49)
    Publication
    2024-11-18 (00:00:00)
    Language
    eng
    Home Page
    https://biomemory.cnr.it/collections/CNR-IPSP-PLAVIT
    Dataset Label
    IPSP-PLAVIT-01
    Dataset Type
    Occurrence
    Dataset subtype
    Specimen
    Description
    PLAVIT Collection preserves more than 1100 isolates (Plant Viruses, Viroids, Bacteriophages) collected mainly in Italy but also from other countries (Europe, Asia, Africa, and America), including 134 distinct viral species belonging to the main taxonomic groups. A limited number of non-mechanically transmissible viral species are stored as infectious clones at - 80° C. Preservation Techniques: (i) Dried leaves: lyophilized infected leaves are stored at -20°C; (ii) Liquid Nitrogen: infected leaves are stored in liquid nitrogen. The PLAVIT collection is partner of MIRRI Italian Node (http://www.mirri-it.it) and partner of H2020 EU project EVA-GLOBAL (https://www.european-virus-archive.com). Since 2015, It is also member of ECCO (European Culture Collection Organization) and of WFCC (World Federation of Culture Collection - number 1057).
    Purpose

    Agriculture, Biocontrol agents, Diagnosis, Pest risk assessment, Biotechnology, Biodiversity, Health

    Keywords
    Occurrence, Agriculture; Biocontrol agents; Diagnosis; Pest risk assessment; Biotechnology; Biodiversity; Health, Specimen
    License
    http://creativecommons.org/licenses/by-nc/4.0/legalcode
    Collection

    Name: Plant Virus Italy
    Identifier: 7b62ecf0-2d6e-4fc2-a22c-be7b674e690b
    Specimen Preservation Method: OTHER

    Taxonomic Coverage
    Order: Bunyavirales
    Class: Duplopiviricetes
    Class: Milneviricetes
    Family: Caulimoviridae
    Family: Alphaflexiviridae
    Order: Geraniales
    Order: Patatavirales
    Family: Botourmiaviridae
    Phylum: Cressdnaviricota
    Phylum: Lenarviricota
    Phylum: Tracheophyta
    Order: Sobelivirales
    Order: Picornavirales
    Family: Tymoviridae
    Kingdom: Plantae
    Phylum: Artverviricota
    Class: Revtraviricetes
    Class: Miaviricetes
    Class: Monjiviricetes
    Order: Serpentovirales
    Order: Tolivirales
    Order: Ortervirales
    Class: Magnoliopsida
    Class: Ellioviricetes
    Order: Martellivirales
    Class: Tolucaviricetes
    Family: Potyviridae
    Family: Solemoviridae
    Family: Betaflexiviridae
    Order: Durnavirales
    Family: Geraniaceae
    Order: Tymovirales
    Family: Geminiviridae
    Class: Alsuviricetes
    Family: Tospoviridae
    Class: Repensiviricetes
    Phylum: Pisuviricota
    Order: Mononegavirales
    Family: Virgaviridae
    Family: Aspiviridae
    Phylum: Negarnaviricota
    Class: Stelpaviricetes
    Kingdom: Viruses
    Family: Bromoviridae
    Order: Geplafuvirales
    Family: Rhabdoviridae
    Family: Secoviridae
    Family: Tombusviridae
    Phylum: Kitrinoviricota
    Family: Partitiviridae
    Family: Closteroviridae
    Class: Pisoniviricetes
    Order: Ourlivirales
    Geographic Coverage
    Europe, Asia, Africa and America
    Min Latitude: -1.964663
    Max Latitude: 54.702354
    Min Longitude: -102.00771
    Max Longitude: 104.999927
    Global Coverage: n/a
    Temporal Coverages
    1905-2023
    Citation
    Accotto G P, Ciuffo M, Vaira A M, Birello G, Bucci G, Ianigro M (2024). Plant Virus Italy - CNR-IPSP collection in Turin (PLAVIT-01). Version 1.1. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/trnr4h accessed via GBIF.org on 2025-05-03.
    Endpoints
    DWC ARCHIVE: https://ipt.ibbr.cnr.it/ipt/archive.do?r=plavit-01
    EML: https://ipt.ibbr.cnr.it/ipt/eml.do?r=plavit-01
    Identifiers
    UUID: 4f929122-4e6e-4b51-8647-c6b947c038d1
    URL: https://ipt.ibbr.cnr.it/ipt/resource?r=plavit-01
    Contributors

    Gian Paolo Accotto (Originator)
    Research Director
    CNR-IPSP-TO, Institute for Sustainable Plant Protection (IPSP) - Turin Headquarters, National Research Council of Italy
    https://orcid.org/0000-0002-3825-1097
    gianpaolo.accotto@ipsp.cnr.it

    Marina Ciuffo (Originator)
    Curator and scientific responsible of the collection
    CNR-IPSP-TO, Institute for Sustainable Plant Protection (IPSP) - Turin Headquarters, National Research Council of Italy
    https://orcid.org/0000-0003-0422-408X
    marina.ciuffo@ipsp.cnr.it

    Anna Maria Vaira (Originator)
    Senior research scientist
    CNR-IPSP-TO, Institute for Sustainable Plant Protection (IPSP) - Turin Headquarters, National Research Council of Italy
    https://orcid.org/0000-0003-2526-4419
    annamaria.vaira@ipsp.cnr.it

    Giancarlo Birello (Originator)
    Research Technician
    CNR-IRCRES-TO, Research Institute on Sustainable Economic Growth (IRCRES) - Section of Turin, National Research Council of Italy
    https://orcid.org/0000-0002-1526-176X
    giancarlo.birello@ircres.cnr.it

    Gabriele Bucci (Metadata author)
    Senior Researcher
    CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
    https://orcid.org/0000-0001-8931-0344
    gabriele.bucci@cnr.it

    Massimo Ianigro (Metadata author)
    Senior Technologist
    CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
    https://orcid.org/0000-0003-1256-771X
    massimo.ianigro@irsa.ba.cnr.it

    Dept. of Bio-Agrifood Sciences (Content provider)
    Research Department
    National Research Council of Italy (CNR)

    CNR-IPSP Institute of Sustainable Plant Protection (Content provider)
    Research Institute
    National Research Council of Italy (CNR)

    Gian Paolo Accotto (Administrative point of contact)
    Reference Person
    CNR-IPSP-TO, Institute for Sustainable Plant Protection (IPSP) - Turin Headquarters
    https://orcid.org/0000-0002-3825-1097
    gianpaolo.accotto@ipsp.cnr.it

    Project

    ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

    Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

    Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC). Extended digital specimens will be linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.) in the frame of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. Bio Memory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

    Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || Bio Memory (CNR-DiSBA Project No. SAC.AD002.173) - CNR-DiSBA - Department of Bio-Agrofood Sciences, National Research Council of Italy

    Funder details:
    Funder Name: Consiglio Nazionale delle Ricerche
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: CNR-DiSBA no. SAC.AD002.173
    Title: Bio Memory Project (CNR-DiSBA)
    Award Url: https://www.disba.cnr.it/en/
    Funder Name: Ministero dell'Università e della Ricerca
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: PNRR Project IR0000032
    Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
    Award Url: https://itineris.cnr.it/
    Project people:

    Gian Paolo Accotto (Principal investigator)
    https://orcid.org/0000-0002-3825-1097

    Marina Ciuffo (Curator)
    https://orcid.org/0000-0003-0422-408X

    Anna Maria Vaira (Author)
    https://orcid.org/0000-0003-2526-4419

    Giancarlo Birello (Metadata author)
    https://orcid.org/0000-0002-1526-176X

    Sampling
    n/a
    Additional Info
    Data and samples were collected and analyzed within the following research projects: MIRRI (http://www.mirri-it.it); H2020 EU project EVA-GLOBAL (www.european-virus-archive.com); EU project SUS-MIRRI (https://www.sus-mirri.it/).
    Acknowledgements
    PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being.
    IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
      National Research Council of Italy. All Rights Reserved.
      Credits

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