DiSSCo-ITINERIS dataset

Microbiology Lab IBBA Pisa Bacterial Collection (IBBA-MLIP-BACTERIA)

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Version
1.2
Created
2024-08-09 (17:39:35)
Modified
2025-02-18 (15:33:27)
Publication
2025-02-18 (00:00:00)
Language
eng
Dataset Label
IBBA-MLIP-BACTERIA
Dataset Type
Occurrence
Dataset subtype
Specimen
Description
MLIP collection preserves fungal, microalgal and bacterial strains, mainly isolated from the Mediterranean agro-food and natural systems. It contains in vivo and in vitro cultures of arbuscular mycorrhizal fungal (AMF) isolates, endophytic bacteria from Canapa sp., Psoralea sp., phycospheric and mycorrhizospheric/rhizospheric bacteria.
Purpose

Crop biofertilizers and biostimulants (either single isolates or consortia), biocontrol agents, bioremediation, phycoremediation, source of molecules of nutraceutical interest (microalgae).

Keywords
Occurrence, Phycospheric Bacteria, Soil Bacteria, Endophytic Bacteria, Specimen
Collection

Name: Microbiology Lab IBBA Pisa Collection
Identifier: 85bb62f8-dc53-41d0-b0b0-980acdaa461d
Specimen Preservation Method: REFRIGERATED

Taxonomic Coverage
Bacteria mainly belonging to Bacillaceae, Pseudomonadaceae, Actinobacteria, Xanthomonadaceae.
Class: Alphaproteobacteria
Order: Paenibacillales
Order: Sphingobacteriales
Family: Alteromonadaceae
Family: Micrococcaceae
Family: Sphingobacteriaceae
Phylum: Firmicutes
Class: Actinomycetia
Family: Xanthomonadaceae
Class: Bacilli
Family: Paenibacillaceae
Order: Sphingomonadales
Family: Rhizobiaceae
Class: Gammaproteobacteria
Family: Cellulomonadaceae
Family: Beijerinckiaceae
Order: Cytophagales
Order: Actinomycetales
Order: Caulobacterales
Order: Xanthomonadales
Order: Staphylococcales
Phylum: Bacteroidota
Order: Pseudomonadales
Order: Rhodobacterales
Family: Bacillaceae
Family: Bacillaceae_H
Family: Planococcaceae
Order: Mycobacteriales
Phylum: Proteobacteria
Family: Caulobacteraceae
Order: Bacillales_B
Order: Bacillales_A
Family: Mycobacteriaceae
Family: Staphylococcaceae
Phylum: Actinobacteriota
Family: Rhodobacteraceae
Family: Spirosomaceae
Family: Microbacteriaceae
Class: Bacteroidia
Family: Pseudomonadaceae
Kingdom: Bacteria
Order: Bacillales
Order: Rhizobiales
Family: Sphingomonadaceae
Order: Enterobacterales
Geographic Coverage
Italy
Min Latitude: 36.315
Max Latitude: 47.279
Min Longitude: 6.328
Max Longitude: 19.16
Global Coverage: n/a
Temporal Coverages
2001-present
Citation
Sbrana C, Chiellini C, Bucci G, Ianigro M (2025). Microbiology Lab IBBA Pisa Bacterial Collection (IBBA-MLIP-BACTERIA). Version 1.2. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/wn7dgu accessed via GBIF.org on 2025-05-03.
Identifiers
UUID: 7af9ca94-74e7-4cd5-9230-ff1f14cd748a
URL: https://ipt.ibbr.cnr.it/ipt/resource?r=ibba-mlip-bacteria
Contributors

Cristiana Sbrana (Originator)
Curator and scientific responsible of the collection
CNR-IBBA-PI, Institute of Agriculture Biology and Biotechnology (IBBA) - Section of Pisa, National Research Council of Italy
https://orcid.org/0000-0002-8058-8566
cristiana.sbrana@ibba.cnr.it

Carolina Chiellini (Originator)
Curator and scientific responsible of the collection
CNR-IBBA-PI, Institute of Agriculture Biology and Biotechnology (IBBA) - Section of Pisa, National Research Council of Italy
https://orcid.org/0000-0002-0756-6459
carolina.chiellini@ibba.cnr.it

Gabriele Bucci (Metadata author)
Senior Researcher
CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
https://orcid.org/0000-0001-8931-0344
gabriele.bucci@cnr.it

Massimo Ianigro (Metadata author)
Senior Technologist
CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0003-1256-771X
massimo.ianigro@irsa.ba.cnr.it

Dept. of Bio-Agrifood Sciences CNR-DiSBA (Content provider)
Research Department
National Research Council of Italy

Institute of Agriculture Biology and Biotechnology CNR-IBBA (Content provider)
National Research Council of Italy

Cristiana Sbrana (Administrative point of contact)
Reference Person
CNR-IBBA-PI, Institute of Agriculture Biology and Biotechnology (IBBA) - Section of Pisa
https://orcid.org/gabriele.bucci@cnr.it
cristiana.sbrana@ibba.cnr.it

Project

ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY Project (CNR-DiSBA Project No. SAC.AD002.173 - The network of biological collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being

Funder details:
Funder Name: Consiglio Nazionale delle Ricerche
Funder Identifiers: https://doi.org/10.13039/501100004462
Award Number: CNR-DiSBA no. SAC.AD002.173
Title: Bio Memory Project (CNR-DiSBA)
Award Url: https://www.disba.cnr.it/en/
Funder Name: Ministero dell'Università e della Ricerca
Funder Identifiers: https://doi.org/10.13039/501100004462
Award Number: PNRR Project IR0000032
Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
Award Url: https://itineris.cnr.it/
Project people:

Cristiana Sbrana (Principal investigator)
https://orcid.org/0000-0002-8058-8566

Carolina Chiellini (Principal investigator)
https://orcid.org/0000-0002-0756-6459

Gabriele Bucci (Custodian steward)
https://orcid.org/0000-0001-8931-0344

Eleonora Fornaro (Programmer)
https://orcid.org/0009-0008-0886-5339

Massimo Ianigro (Programmer)
https://orcid.org/0000-0003-1256-771X

Sampling
n/a
Additional Info
IBBA-MLIP-BACTERIA collection specimens are available for research use only upon request to the authors.
Acknowledgements
PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being.
IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
  National Research Council of Italy. All Rights Reserved.

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