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  • Dataset 10.15468/9868ye

    • DiSSCo-ITINERIS dataset

    Pinus heldrichii var. leucodermis - Tissue and DNA extract collection (CNR-IBBR-Pinus-leucodermis)

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    doi
    https://doi.org/10.15468/9868ye
    Version
    1.10
    Created
    2023-04-24 (17:52:35)
    Modified
    2025-02-13 (15:51:01)
    Publication
    2025-02-12 (00:00:00)
    Language
    eng
    Home Page
    https://biomemory.cnr.it/collections/cnr-ibbr-dnafor
    Dataset Label
    CNR-IBBR-PINUS-LEUCODERMIS
    Dataset Type
    Occurrence
    Dataset subtype
    Specimen
    Description
    Tissue and DNA samples from more that 500 individuals of Pinus heldreichii var. leucodermis from the italian range of the species (Basilicata and Calabria, Southern Italy). Needles have been collected from georeferenced, individual trees in the forest, transported to the lab and kept at -80 °C for long-term storage. DNA has been extracted from each tissue sample for purpose of population genetic studies and evolutionary history reconstruction, and it is currently maintained at -20 *C for future research.
    Purpose

    Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change

    Keywords
    Occurrence, Bosnian pine, Pinus heldreichii var. leucodermis; Pino loricato; Pollino, Heldreich's pine, Specimen
    License
    http://creativecommons.org/licenses/by-nc/4.0/legalcode
    Collection

    Name: DNA and tissue samples for genetic analyses on forest trees (CNR-IBBR-DNAFOR)
    Identifier: 90a41989-9906-41d4-aff9-0dc8420c7a45
    Specimen Preservation Method: FREEZE_DRIED

    Taxonomic Coverage
    Pinus heldreichii var. leucodermis, Pino loricato, Bosnian pine, Heldreich's pine
    Kingdom: Plantae
    Order: Pinales
    Phylum: Tracheophyta
    Class: Pinopsida
    Family: Pinaceae
    Geographic Coverage
    Southern Italy (Basilicata and Calabria, Mt. Pollino National Park)
    Min Latitude: 39.648652
    Max Latitude: 40.128927
    Min Longitude: 15.92475
    Max Longitude: 16.22366
    Global Coverage: n/a
    Temporal Coverages
    2014
    Citation
    Spanu I, Bagnoli F, Avanzi C, Vendramin G G, Piotti A, Bucci G, Ianigro M (2025). Pinus heldrichii var. leucodermis - Tissue and DNA extract collection (CNR-IBBR-Pinus-leucodermis). Version 1.10. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/9868ye accessed via GBIF.org on 2025-05-03.
    Endpoints
    DWC ARCHIVE: https://ipt.ibbr.cnr.it/ipt/archive.do?r=cnr-ibbr-pinus-leucodermis
    EML: https://ipt.ibbr.cnr.it/ipt/eml.do?r=cnr-ibbr-pinus-leucodermis
    Identifiers
    UUID: 7bc00882-3363-476d-b3b0-919bbb875c2b
    URL: https://ipt.ibbr.cnr.it/ipt/resource?r=cnr-ibbr-pinus-leucodermis
    Contributors

    Ilaria Spanu (Originator)
    Researcher
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
    ilaria.spanu@ibbr.cnr.it

    Francesca Bagnoli (Originator)
    Researcher
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
    https://orcid.org/0000-0001-6909-0006
    francesca.bagnoli@ibbr.cnr.it

    Camilla Avanzi (Originator)
    Researcher
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
    https://orcid.org/0000-0003-1632-5304
    camilla.avanzi@ibbr.cnr.it

    Giovanni Giuseppe Vendramin (Originator)
    Research Director
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
    https://orcid.org/0000-0001-9921-7872
    giovanni.vendramin@ibbr.cnr.it

    Andrea Piotti (Originator)
    Reference Person
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino
    https://orcid.org/0000-0002-3324-5325
    andrea.piotti@ibbr.cnr.it

    Gabriele Bucci (Metadata author)
    Senior Researcher
    CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
    https://orcid.org/0000-0001-8931-0344
    gabriele.bucci@cnr.it

    Massimo Ianigro (Metadata author)
    Senior Technologist
    CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
    https://orcid.org/gabriele.bucci@cnr.it
    massimo.ianigro@irsa.ba.cnr.it

    Institute of Bio Sciences and Bio Resources CNR-IBBR (Owner)
    Research Institute
    National Research Council of Italy (CNR)

    Dept. of Bio-Agrifood Sciences (Owner)
    National Research Council of Italy (CNR)

    Andrea Piotti (Administrative point of contact)
    Reference Person
    CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino
    https://orcid.org/gabriele.bucci@cnr.it
    andrea.piotti@ibbr.cnr.it

    Project

    ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

    Identifier: PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173

    Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.

    Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173

    Funder details:
    Funder Name: Consiglio Nazionale delle Ricerche
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: CNR-DiSBA no. SAC.AD002.173
    Title: Bio Memory Project (CNR-DiSBA)
    Award Url: https://www.disba.cnr.it/en/
    Funder Name: Ministero dell'Università e della Ricerca
    Funder Identifiers: https://doi.org/10.13039/501100004462
    Award Number: PNRR Project IR0000032
    Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
    Award Url: https://itineris.cnr.it/
    Project people:

    Giovanni Giuseppe Vendramin (Principal investigator)
    https://orcid.org/0000-0001-9921-7872

    Gabriele Bucci (Metadata author)
    https://orcid.org/0000-0001-8931-0344

    Eleonora Fornaro (Programmer)
    https://orcid.org/0009-0008-0886-5339

    Massimo Ianigro (Programmer)
    https://orcid.org/0000-0003-1256-771X

    Marina Tumolo (Author)
    https://orcid.org/0000-0001-8182-0454

    Domenico De Paola (Author)
    https://orcid.org/0000-0001-5667-3114

    Sampling
    Method Steps:
    Additional Info
    n/a
    Acknowledgements
    PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures”. CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being.
    IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
      National Research Council of Italy. All Rights Reserved.
      Credits

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