DiSSCo-ITINERIS dataset

Forest Tree Fungal Collection (IPSP-FTFC)

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Version
n/a
Created
2024-08-10 (11:47:55)
Modified
2024-08-10 (11:48:57)
Publication
2024-08-10 (00:00:00)
Language
eng
Dataset Label
n/a
Dataset Type
Occurrence
Dataset subtype
n/a
Description
The IPSP-FTC dataset includes plant pathogenic fungi causing diseases on forest and urban trees. Fungi were isolated from plant material of various origin, and were characterized by their pathogenicity on plant species. The accessions are maintained in vitro on artificial substrates, in refrigerators at -4°C in glass tubes or at -20 °C in glycerol, or as spores and conidia on vegetal material. Strains are available for research purposes.
Purpose

Plant Pathology, Biocontrol agents, Forestry

Keywords
Occurrence, Fungi, Pathogens, Tree diseases, Cankers, Mycelium, Specimen
Collection

Name: IPSP Forest Tree Fungal Collection (CNR-IPSP-FTFC)
Identifier: 6635259a-e0c9-436e-af0f-7a4a62217bf9
Specimen Preservation Method: OTHER

Taxonomic Coverage
Large variety of ascomycetous fungi, some basidiomycetes, characterized as pathogens of forest trees (Seiridium spp., Diplodia spp., Pestalotiopsis spp., Armillaria spp., Heterobasidion abietinum, Cryphonectria parasitica). A second core of collection is composed by 35 strains of Trichoderma spp. and Clonostachys rosea, characterized as Biocontrol Agents (BCA). Some basidiomycetes used for trials on mycelium-based biomaterial (Pleurotus ostreatus, Phomitopsis pinicola, Ganoderma lucidum, Trametes versicolor). One strain of the oomycetes Phytophthora cambivora and one of P. cinnamomi are also available.
Kingdom: Fungi
Family: Pestalotiopsidaceae
Family: Botryosphaeriaceae
Family: Gnomoniaceae
Family: Amphisphaeriaceae
Family: Didymellaceae
Family: Godroniaceae
Geographic Coverage
Italy, Greece, United States of America, France, Algeria, Spain, Malta, Morocco, Portugal, Canada, Libya
Min Latitude: -19
Max Latitude: 90
Min Longitude: -180
Max Longitude: 180
Global Coverage: n/a
Temporal Coverages
1999-2014
Citation
Danti R, Della Rocca G, Secci S, Barberini S, Frascella A, Emiliani G, Bucci G, Ianigro M (2024). Forest Tree Fungal Collection (IPSP-FTFC). Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.15468/rapbdp accessed via GBIF.org on 2025-05-03.
Contributors

Roberto Danti (Originator)
Curator and scientific responsible of the collection
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0002-2866-3688
roberto.danti@ipsp.cnr.it

Gianni Della Rocca (Originator)
Curator of the collection
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0001-5888-2550
gianni.dellarocca@ipsp.cnr.it

Stefano Secci (Originator)
Responsible for cultivation and preservation of plants and web database update
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
stefano.secci@ipsp.cnr.it

Sara Barberini (Originator)
Responsible for molecular characterization and micropropagation
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0001-6615-6014
sara.barberini@ipsp.cnr.it

Arcangela Frascella (Originator)
Molecular characterization and strain preservation
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0002-8579-7981
angela.frascella@ipsp.cnr.it

Giovanni Emiliani (Originator)
Molecular characterization and database responsible of collection
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
https://orcid.org/0000-0002-1264-8002
giovanni.emiliani@ipsp.cnr.it

Gabriele Bucci (Metadata author)
Senior Researcher
CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
https://orcid.org/0000-0001-8931-0344
gabriele.bucci@cnr.it

Massimo Ianigro (Metadata author)
Senior Technologist
CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0003-1256-771X
massimo.ianigro@irsa.ba.cnr.it

Dept. of Bio-Agrifood Sciences (Content provider)
Research Department
National Research Council of Italy (CNR)

Roberto Danti (Administrative point of contact)
Reference Person
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence)
https://orcid.org/0000-0002-2866-3688
roberto.danti@ipsp.cnr.it

Project

ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. Bio Memory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || Bio Memory (CNR-DiSBA Project No. SAC.AD002.173

Project people:

Giovanni Giuseppe Vendramin (Principal investigator)
https://orcid.org/0000-0001-9921-7872

Mauro Centritto (Principal investigator)
https://orcid.org/0000-0002-3739-1397

Sampling
Method Steps:
Additional Info
Data and samples collected and analyzed within the following research projects: Partner of MIRRI Italian Node (http://www.mirri-it.it); involved in CNR BioGenRes (http://www.biogenres.cnr.it/); Life Mycorestore (LIFE18 CCA/IT/001110)
Acknowledgements
n/a
IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
  National Research Council of Italy. All Rights Reserved.

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