DiSSCo-ITINERIS dataset

The ITEM fungal repository dataset (ISPA-ITEM-01)

(Double-click on the below map to enlarge it).

Version
1.1
Created
2024-08-11 (11:53:34)
Modified
2025-02-19 (16:36:31)
Publication
2025-02-19 (00:00:00)
Language
eng
Dataset Label
ISPA-ITEM-01
Dataset Type
Occurrence
Dataset subtype
Specimen
Description
The ITEM Collection includes more than 13,000 strains belonging to various agro-food microorganisms with phytopathological and toxicological significance. Thousands strains belonging to toxigenic genera Aspergillus, Alternaria, Fusarium, and Penicillium, representing wide biodiversity to investigate strategies for reducing mycotoxin contamination. Also yeasts (300) and lactic bacteria (400) has been also preserved and characterized for autochthonous industrial fermentation of typical Apulian food.
Purpose

Agriculture, Biocontrol agents, Food Science, Bioremediation, Pharma, Health

Keywords
Occurrence, Fungi, Lactic Bacteria, Yeasts, Toxicology, Food Science, Phytopathology, Specimen
Collection

Name: Collezione di culture microbiche agroalimentari - Agri-Food Microbial Culture Collection (ITEM)
Identifier: 21c9b326-b756-4391-b302-f3e095b947cb
Specimen Preservation Method: REFRIGERATED

Taxonomic Coverage
N/A
Class: Alphaproteobacteria
Order: Pleosporales
Class: Eurotiomycetes
Order: Campylobacterales
Family: Streptococcaceae
Family: Cordycipitaceae
Family: Pleosporaceae
Family: Saccharomycetaceae
Family: Saccharomycodaceae
Phylum: Proteobacteria
Family: Didymellaceae
Order: Eurotiales
Family: Leptosphaeriaceae
Order: Capnodiales
Class: Sordariomycetes
Class: Saccharomycetes
Phylum: Ascomycota
Family: Mycosphaerellaceae
Family: Pseudomonadaceae
Family: Acetobacteraceae
Family: Hypocreaceae
Family: Enterobacteriaceae
Order: Enterobacterales
Kingdom: Fungi
Order: Hypocreales
Family: Sclerotiniaceae
Family: Pleurotaceae
Phylum: Firmicutes
Phylum: Campylobacterota
Order: Acetobacterales
Order: Botryosphaeriales
Class: Bacilli
Class: Agaricomycetes
Class: Gammaproteobacteria
Family: Metschnikowiaceae
Family: Aspergillaceae
Family: Debaryomycetaceae
Family: Saccotheciaceae
Order: Lactobacillales
Order: Pseudomonadales
Class: Campylobacteria
Phylum: Basidiomycota
Order: Saccharomycetales
Family: Cladosporiaceae
Family: Arcobacteraceae
Family: Trichomonascaceae
Order: Helotiales
Order: Agaricales
Family: Nectriaceae
Class: Dothideomycetes
Kingdom: Bacteria
Class: Leotiomycetes
Family: Lactobacillaceae
Order: Dothideales
Family: Botryosphaeriaceae
Geographic Coverage
Worldwide
Min Latitude: -90
Max Latitude: 90
Min Longitude: -180
Max Longitude: 180
Global Coverage: 1
Temporal Coverages
1952-2003
Citation
Perrone G, Susca A, Moretti A, Logrieco A F, Bucci G, Ianigro M (2025). The ITEM fungal repository dataset (ISPA-ITEM-01). Version 1.1. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset https://doi.org/10.13039/501100021856 accessed via GBIF.org on 2025-05-03.
Identifiers
DOI: 10.15468/57z3hx
UUID: 18abd151-94fd-40a9-b9c4-3bc7e3af7af1
URL: https://ipt.ibbr.cnr.it/ipt/resource?r=ispa-item-01
Contributors

Giancarlo Perrone (Originator)
Curator and scientific responsible of the collection
CNR-ISPA-BA, Institute of Sciences for Food Production (ISPA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0002-3841-6066
giancarlo.perrone@ispa.cnr.it

Antonia Susca (Originator)
Responsible for Molecular characterization and Collection Database
CNR-ISPA-BA, Institute of Sciences for Food Production (ISPA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0003-0021-8774
antonella.susca@ispa.cnr.it

Antonio Moretti (Originator)
Responsible for Morphological, physiological and biochemical characterization
CNR-ISPA-BA, Institute of Sciences for Food Production (ISPA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0002-5232-6972
antonio.moretti@ispa.cnr.it

Antonio Francesco Logrieco (Originator)
Director of the collection
CNR-ISPA-BA, Institute of Sciences for Food Production (ISPA) - Section of Bari, National Research Council of Italy
https://orcid.org/0000-0002-8606-451X
antonio.logrieco@ispa.cnr.it

Gabriele Bucci (Metadata author)
Senior Researcher
CNR-IBBR, Institute of Biosciences and Bio Resources, National Research Council of Italy
https://orcid.org/0000-0001-8931-0344
gabriele.bucci@cnr.it

Massimo Ianigro (Metadata author)
Senior Technologist
CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
https://orcid.org/gabriele.bucci@cnr.it
massimo.ianigro@irsa.ba.cnr.it

Dept. of Bio-Agrifood Sciences (Content provider)
Research Department
National Research Council of Italy (CNR)

Institute for Food Sciences ISPA (Owner)
National Research Council of Italy

Antonio Moretti (Administrative point of contact)
Reference Person
CNR-ISPA-BA, Institute of Sciences for Food Production (ISPA) - Section of Bari
https://orcid.org/gabriele.bucci@cnr.it
antonio.moretti@ispa.cnr.it

Project

ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY

Identifier: PNRR Project IR0000032 | CNR SAC.AD002.173

Content: ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. Bio Memory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

Funding: ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || Bio Memory (CNR-DiSBA Project No. SAC.AD002.173)

Funder details:
Funder Name: Consiglio Nazionale delle Ricerche
Funder Identifiers: https://doi.org/10.13039/501100004462
Award Number: CNR-DiSBA no. SAC.AD002.173
Title: Bio Memory Project (CNR-DiSBA)
Award Url: https://www.disba.cnr.it/en/
Funder Name: Ministero dell'Università e della Ricerca
Funder Identifiers: https://doi.org/10.13039/501100021856
Award Number: PNRR Project IR0000032
Title: ITINERIS - Italian Integrated Environmental Research Infrastructures System
Award Url: https://itineris.cnr.it
Project people:

Giovanni Giuseppe Vendramin (Principal investigator)
https://orcid.org/0000-0001-9921-7872

Antonio Moretti (Principal investigator)
https://orcid.org/0000-0002-5232-6972

Eleonora Fornaro (Programmer)
https://orcid.org/0009-0008-0886-5339

Marina Tumolo (Reviewer)
https://orcid.org/0000-0001-8182-0454

Sampling
n/a
Additional Info
This dataset is also included in the project SUS-MIRRI (https://www.sus-mirri.it/).
Acknowledgements
PNRR project IR0000032 - ITINERIS, Italian Integrated Environmental Research Infrastructures System - CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU - Next Generation EU - Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” BioMemory (CNR-DiSBA Project No. SAC.AD002.173), the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being.
IR0000032 – ITINERIS, Italian Integrated Environmental Research Infrastructures System (D.D. n. 130/2022 - CUP B53C22002150006) Funded by EU - Next Generation EU PNRR- Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures”
  National Research Council of Italy. All Rights Reserved.

Navigation